List of publications



Papers

  1. KONC, Janez, JANEŽIČ, Dušanka. ProBiS: A web server for detection of structurally similar protein binding sites. Nucleic Acids Res., 2010, 38, W436-W440. Free Text

  2. KONC, Janez, JANEŽIČ, Dušanka. ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment. Bioinformatics, 2010, 26, 1160-1168. Free Text

  3. KOVAČ, Andreja, KONC, Janez, VEHAR, Blaž, BOSTOCK, Julieanne, CHOPRA, Ian, JANEŽIČ, Dušanka, GOBEC, Stanislav. Discovery of new inhibitors of D-alanine:D-alanine ligase by structure-based virtual screening. J. Med. Chem., 2008, 51, 7442-7448. Full Text

  4. CARL, Nejc, KONC, Janez, JANEŽIČ, Dušanka. Protein surface conservation in binding sites. J. Chem. Inf. Mod., 2008, 48, 1279-1286. Full Text

  5. KONC, Janez, JANEŽIČ, Dušanka. Protein-protein binding-sites prediction by protein surface structure conservation. J. Chem. Inf. Mod., 2007, 47, 940-944. Full Text

  6. KONC, Janez, JANEŽIČ, Dušanka. A branch and bound algorithm for matching protein structures. Lect. Notes Comput. Sci., 2007, 4432, 399-406. Full Text

  7. KONC, Janez, JANEŽIČ, Dušanka. An improved branch and bound algorithm for the maximum clique problem. MATCH Commun. Math. Comput. Chem., 2007, 58, 569-590. PDF

  8. MRAVLJAK, Janez, KONC, Janez, HODOŠČEK, Milan, ŠOLMAJER, Tomaž, PEČAR, Slavko. Spin-labeled alkylphospholipids in a dipalmitoylphosphatidylcholine bilayer : molecular dynamics simulations. J. Phys. Chem. B, 2006, 110, 25559-25561. Full Text

  9. KONC, Janez, HODOŠČEK, Milan, JANEŽIČ, Dušanka. Molecular surface walk. Croat. Chem. Acta, 2006, 79, 237-241. PDF

  10. KRISTAN, Katja, KRAJNC, Katja, KONC, Janez, GOBEC, Stanislav, STOJAN, Jure, LANIŠNIK-RIŽNER, Tea. Phytoestrogens as inibitors of fungal 17ß-hydroxysteroid dehydrogenase. Steroids, 2005, 70, 626-635. Full Text

Selected lectures

  1. KONC, Janez, JANEŽIČ, Dušanka. Protein-protein binding sites prediction by protein surface structure conservation, 5th Joint Meeting on Medicinal Chemistry, June 17-21, 2007,Portorož, Slovenia.

  2. KONC, Janez. Binding-sites prediction assisting protein-protein docking. International symposium on networks in bioinformatics, 21-22 April 2008, Amsterdam.

  3. KONC, Janez, JANEŽIČ, Dušanka. Fold and sequence independent algorithm for prediction of protein-protein binding sites. Regional biophysics conference 2009, February 10-14, 2009, Linz, Austria.

  4. KONC, Janez, CARL, Nejc, JANEŽIČ, Dušanka. Protein-protein binding sites prediction using molecular modeling approach, Regional Biophysical Conference, 21-25 August 2007, Balatonfüred, Hungary.

  5. KONC, Janez, CARL, Nejc, JANEŽIČ, Dušanka. ProBiS: a web-based tool for rapid protein binding sites prediction, 2nd European conference on chemistry for life sciences, 4-8 September 2007, Wroclaw, Poland.

  6. KONC, Janez, CARL, Nejc, JANEŽIČ, Dušanka. ProBiS: a web-based tool for rapid protein binding sites prediction, Conferentia chemometrica 2007, Budapest, September 2-5, 2007.

  7. KONC, Janez, JANEŽIČ, Dušanka. A branch and bound algorithm for matching protein structures, TopMol 2006 - 20 years anniversary of molecular topology at Cluj, Babes-Bolyai university, Cluj-Napoca, September 25-30, 2006.

  8. KONC, Janez, JANEŽIČ, Dušanka. Binding-sites prediction assisting protein-protein docking, 2008 molecular informatics and bioinformatics international symposium, March 27-29, 2008, Budapest, Hungary.

  9. KONC, Janez. Predicting protein-protein binding sites, seminar at IZTECH, Department of Mathematics. Izmir, Turkey, 2006.

  10. KONC, Janez, JANEŽIČ, Dušanka. Protein-protein binding sites prediction by protein surface structure conservation, From molecular informatics to bioinformatics, Budapest, Hungary, 19-21 March 2007.

PhD Thesis